Whether you are lodging your wages and PAYG monthly as part of an IAS or quarterly as part of your BAS, your activity statement will always display the PAYG amount owed that it has received through STP filing for that period. It will never reflect what you have already paid since that is irrelevant for the purpose of the lodgement.
You will need to lodge the Activity Statement with this pre-populated data from the STP filings.
However, depending on when you started using Paysauce and paying PAYG on payday will determine how much you actually owe.
For example if you were using Paysauce from 1 July - 31 July then you will have already paid the entire amount of PAYG.
So whilst your lodgement says you owe this amount, you can view the amounts already paid under Accounts and Payments and Account transactions. You should see each payruns PAYG already credited to your ATO account.
If you started using Paysauce part way through a period then you should review the Account Transactions to see which payruns have already had the PAYG paid.
